| abortTOPPTool() | TOPPViewBase | protectedslot |
| activate1DSpectrum(int index) | TOPPViewBase | slot |
| activate1DSpectrum(std::vector< int, std::allocator< int > > indices) | TOPPViewBase | slot |
| add_2d_context_ | TOPPViewBase | protected |
| addData(FeatureMapSharedPtrType feature_map, ConsensusMapSharedPtrType consensus_map, std::vector< PeptideIdentification > &peptides, ExperimentSharedPtrType peak_map, LayerData::DataType data_type, bool show_as_1d, bool show_options, bool as_new_window=true, const String &filename="", const String &caption="", UInt window_id=0, Size spectrum_id=0) | TOPPViewBase | |
| addDataDB(UInt db_id, bool show_options, String caption="", UInt window_id=0) | TOPPViewBase | |
| addDataFile(const String &filename, bool show_options, bool add_to_recent, String caption="", UInt window_id=0, Size spectrum_id=0) | TOPPViewBase | |
| addRecentFile_(const String &filename) | TOPPViewBase | protected |
| annotateWithID() | TOPPViewBase | slot |
| CAPTION_3D_SUFFIX_ | TOPPViewBase | privatestatic |
| changeLabel(QAction *) | TOPPViewBase | slot |
| changeLayerFlag(bool) | TOPPViewBase | slot |
| changeUnassigned(QAction *) | TOPPViewBase | slot |
| check_defaults_ | DefaultParamHandler | protected |
| checkPreferences_() | TOPPViewBase | protected |
| closeByTab(int id) | TOPPViewBase | protectedslot |
| closeEvent(QCloseEvent *event) | TOPPViewBase | protected |
| closeFile() | TOPPViewBase | slot |
| connectToDB_(DBConnection &db) | TOPPViewBase | protected |
| ConsensusMapSharedPtrType typedef | TOPPViewBase | |
| ConsensusMapType typedef | TOPPViewBase | |
| containsMS1Scans(const ExperimentType &exp) | TOPPViewBase | static |
| copyLayer(const QMimeData *data, QWidget *source, int id=-1) | TOPPViewBase | protectedslot |
| countMS1Zeros(const ExperimentType &exp) | TOPPViewBase | static |
| current_path_ | TOPPViewBase | protected |
| deactivate1DSpectrum(int index) | TOPPViewBase | slot |
| DefaultParamHandler(const String &name) | DefaultParamHandler | |
| DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
| defaults_ | DefaultParamHandler | protected |
| defaultsToParam_() | DefaultParamHandler | protected |
| dm_elements_2d_ | TOPPViewBase | protected |
| dm_hull_2d_ | TOPPViewBase | protected |
| dm_hulls_2d_ | TOPPViewBase | protected |
| dm_ident_2d_ | TOPPViewBase | protected |
| dm_label_2d_ | TOPPViewBase | protected |
| dm_precursors_2d_ | TOPPViewBase | protected |
| dm_unassigned_2d_ | TOPPViewBase | protected |
| draw_group_1d_ | TOPPViewBase | protected |
| editMetadata() | TOPPViewBase | slot |
| enhancedWorkspaceWindowChanged(int id) | TOPPViewBase | protectedslot |
| error_name_ | DefaultParamHandler | protected |
| estimateNoiseFromRandomMS1Scans(const ExperimentType &exp, UInt n_scans=10) | TOPPViewBase | |
| ExperimentSharedPtrType typedef | TOPPViewBase | |
| ExperimentType typedef | TOPPViewBase | |
| FeatureMapSharedPtrType typedef | TOPPViewBase | |
| FeatureMapType typedef | TOPPViewBase | |
| file_name | TOPPViewBase | |
| fileChanged_(const String &) | TOPPViewBase | protectedslot |
| filter_dock_widget_ | TOPPViewBase | protected |
| filterContextMenu(const QPoint &pos) | TOPPViewBase | protectedslot |
| filterEdit(QListWidgetItem *item) | TOPPViewBase | protectedslot |
| filters_ | TOPPViewBase | protected |
| filters_check_box_ | TOPPViewBase | protected |
| finishTOPPToolExecution(int exitCode, QProcess::ExitStatus exitStatus) | TOPPViewBase | protectedslot |
| getActive1DWidget() const | TOPPViewBase | |
| getActive2DWidget() const | TOPPViewBase | |
| getActive3DWidget() const | TOPPViewBase | |
| getActiveCanvas() const | TOPPViewBase | |
| getActiveSpectrumWidget() const | TOPPViewBase | |
| getCurrentLayer() const | TOPPViewBase | |
| getDefaults() const | DefaultParamHandler | |
| getFileList_(const String &path_overwrite="") | TOPPViewBase | protected |
| getFilenamesOfOpenFiles_() | TOPPViewBase | protected |
| getName() const | DefaultParamHandler | |
| getParameters() const | DefaultParamHandler | |
| getSpectraIdentificationViewWidget() | TOPPViewBase | |
| getSpectrumParameters(UInt dim) | TOPPViewBase | |
| getSubsections() const | DefaultParamHandler | |
| getWorkspace() const | TOPPViewBase | |
| group_label_2d_ | TOPPViewBase | protected |
| group_unassigned_2d_ | TOPPViewBase | protected |
| hasPeptideIdentifications(const ExperimentType &map) | TOPPViewBase | static |
| identificationview_behavior_ | TOPPViewBase | protected |
| in | TOPPViewBase | |
| initializeDefaultParameters_() | TOPPViewBase | protected |
| intensity_button_group_ | TOPPViewBase | protected |
| layer_dock_widget_ | TOPPViewBase | protected |
| layer_manager_ | TOPPViewBase | protected |
| layer_name | TOPPViewBase | |
| layerActivated() | TOPPViewBase | slot |
| layerContextMenu(const QPoint &pos) | TOPPViewBase | protectedslot |
| layerDeactivated() | TOPPViewBase | slot |
| layerEdit(QListWidgetItem *) | TOPPViewBase | protectedslot |
| layerFilterVisibilityChange(bool) | TOPPViewBase | protectedslot |
| layerSelectionChange(int) | TOPPViewBase | protectedslot |
| layerStatistics() | TOPPViewBase | slot |
| layerVisibilityChange(QListWidgetItem *item) | TOPPViewBase | protectedslot |
| layerZoomChanged() | TOPPViewBase | slot |
| linkZoom() | TOPPViewBase | slot |
| linkZoom_action_ | TOPPViewBase | protected |
| loadFile(QString) | TOPPViewBase | slot |
| loadFiles(const StringList &list, QSplashScreen *splash_screen) | TOPPViewBase | |
| loadPreferences(String filename="") | TOPPViewBase | |
| log_ | TOPPViewBase | protected |
| logContextMenu(const QPoint &pos) | TOPPViewBase | protectedslot |
| LogState enum name | TOPPViewBase | protected |
| LS_ERROR enum value | TOPPViewBase | protected |
| LS_NOTICE enum value | TOPPViewBase | protected |
| LS_WARNING enum value | TOPPViewBase | protected |
| message_label_ | TOPPViewBase | protected |
| metadataDatabaseDialog() | TOPPViewBase | slot |
| metadataFileDialog() | TOPPViewBase | slot |
| mz_label_ | TOPPViewBase | protected |
| openDatabaseDialog() | TOPPViewBase | slot |
| openExampleDialog() | TOPPViewBase | slot |
| openFileDialog() | TOPPViewBase | slot |
| openRecentFile() | TOPPViewBase | protectedslot |
| operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual |
| operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual |
| out | TOPPViewBase | |
| param | TOPPViewBase | |
| param_ | DefaultParamHandler | protected |
| preferencesDialog() | TOPPViewBase | slot |
| process | TOPPViewBase | |
| projections_2d_ | TOPPViewBase | protected |
| recent_actions_ | TOPPViewBase | protected |
| recent_files_ | TOPPViewBase | protected |
| rerunTOPPTool() | TOPPViewBase | protectedslot |
| resetZoom() | TOPPViewBase | slot |
| rt_label_ | TOPPViewBase | protected |
| runTOPPTool_() | TOPPViewBase | protected |
| saveLayerAll() | TOPPViewBase | slot |
| saveLayerVisible() | TOPPViewBase | slot |
| savePreferences() | TOPPViewBase | |
| setDrawMode1D(int) | TOPPViewBase | slot |
| setIntensityMode(int) | TOPPViewBase | slot |
| setName(const String &name) | DefaultParamHandler | |
| setParameters(const Param ¶m) | DefaultParamHandler | |
| showAboutDialog() | TOPPViewBase | slot |
| showCurrentPeaksAs2D() | TOPPViewBase | slot |
| showCurrentPeaksAs3D() | TOPPViewBase | slot |
| showCursorStatus(double mz, double rt) | TOPPViewBase | slot |
| showCursorStatusInvert(double mz, double rt) | TOPPViewBase | slot |
| showGoToDialog() | TOPPViewBase | slot |
| showLogMessage_(LogState state, const String &heading, const String &body) | TOPPViewBase | protected |
| showPreferences() | TOPPViewBase | slot |
| showSpectrumAlignmentDialog() | TOPPViewBase | slot |
| showSpectrumAs1D(int index) | TOPPViewBase | slot |
| showSpectrumAs1D(std::vector< int, std::allocator< int > > indices) | TOPPViewBase | slot |
| showSpectrumBrowser() | TOPPViewBase | protectedslot |
| showSpectrumGenerationDialog() | TOPPViewBase | slot |
| showSpectrumMetaData(int spectrum_index) | TOPPViewBase | protectedslot |
| showSpectrumWidgetInWindow(SpectrumWidget *sw, const String &caption) | TOPPViewBase | |
| showStatusMessage(std::string msg, OpenMS::UInt time) | TOPPViewBase | slot |
| showTOPPDialog() | TOPPViewBase | slot |
| showTOPPDialog_(bool visible) | TOPPViewBase | protected |
| showURL() | TOPPViewBase | slot |
| spectra_identification_view_widget_ | TOPPViewBase | protected |
| spectra_view_widget_ | TOPPViewBase | protected |
| spectraview_behavior_ | TOPPViewBase | protected |
| spectrum_id | TOPPViewBase | |
| SpectrumType typedef | TOPPViewBase | |
| subsections_ | DefaultParamHandler | protected |
| tab_bar_ | TOPPViewBase | protected |
| TestTOPPView class | TOPPViewBase | friend |
| tileHorizontal() | TOPPViewBase | slot |
| tileVertical() | TOPPViewBase | slot |
| timer | TOPPViewBase | |
| toggleAxisLegends() | TOPPViewBase | slot |
| toggleGridLines() | TOPPViewBase | slot |
| toggleProjections() | TOPPViewBase | slot |
| tool | TOPPViewBase | |
| tool_bar_ | TOPPViewBase | protected |
| tool_bar_1d_ | TOPPViewBase | protected |
| tool_bar_2d_cons_ | TOPPViewBase | protected |
| tool_bar_2d_feat_ | TOPPViewBase | protected |
| tool_bar_2d_ident_ | TOPPViewBase | protected |
| tool_bar_2d_peak_ | TOPPViewBase | protected |
| topp_ | TOPPViewBase | protected |
| TOPPViewBase(QWidget *parent=0) | TOPPViewBase | |
| updateCurrentPath() | TOPPViewBase | slot |
| updateFilterBar() | TOPPViewBase | slot |
| updateLayerBar() | TOPPViewBase | slot |
| updateMembers_() | DefaultParamHandler | protectedvirtual |
| updateMenu() | TOPPViewBase | slot |
| updateProcessLog() | TOPPViewBase | protectedslot |
| updateRecentMenu_() | TOPPViewBase | protected |
| updateTabBar(QWidget *w) | TOPPViewBase | slot |
| updateToolBar() | TOPPViewBase | slot |
| updateViewBar() | TOPPViewBase | slot |
| view_behavior_ | TOPPViewBase | protected |
| viewChanged(int) | TOPPViewBase | slot |
| views_dockwidget_ | TOPPViewBase | protected |
| views_tabwidget_ | TOPPViewBase | protected |
| visible | TOPPViewBase | |
| warn_empty_defaults_ | DefaultParamHandler | protected |
| watcher_ | TOPPViewBase | protected |
| watcher_msgbox_ | TOPPViewBase | protected |
| window_(int id) const | TOPPViewBase | protected |
| window_id | TOPPViewBase | |
| ws_ | TOPPViewBase | protected |
| zoom_together_ | TOPPViewBase | protected |
| ~DefaultParamHandler() | DefaultParamHandler | virtual |
| ~TOPPViewBase() | TOPPViewBase | |