| add_modification_(std::vector< TargetedExperiment::Peptide::Modification > &mods, int location, ResidueModification &rmod, const String &name) | TransitionTSVReader | private |
| begin_ | ProgressLogger | mutableprotected |
| cleanUpTransition(TSVTransition &mytransition) | TransitionTSVReader | private |
| CMD enum value | ProgressLogger | |
| convertTargetedExperimentToTSV(const char *filename, OpenMS::TargetedExperiment &targeted_exp) | TransitionTSVReader | |
| convertTSVToTargetedExperiment(const char *filename, OpenMS::TargetedExperiment &targeted_exp) | TransitionTSVReader | |
| createPeptide_(std::vector< TSVTransition >::iterator &tr_it, OpenMS::TargetedExperiment::Peptide &peptide) | TransitionTSVReader | private |
| createProtein_(std::vector< TSVTransition >::iterator &tr_it, OpenMS::TargetedExperiment::Protein &protein) | TransitionTSVReader | private |
| createTransition_(std::vector< TSVTransition >::iterator &tr_it, OpenMS::ReactionMonitoringTransition &rm_trans) | TransitionTSVReader | private |
| dlg_ | ProgressLogger | mutableprotected |
| end_ | ProgressLogger | mutableprotected |
| endProgress() const | ProgressLogger | |
| getLogType() const | ProgressLogger | |
| getTSVHeader(std::string &line, char &delimiter, std::vector< std::string > header, std::map< std::string, int > &header_dict) | TransitionTSVReader | private |
| GUI enum value | ProgressLogger | |
| header_names | TransitionTSVReader | privatestatic |
| last_invoke_ | ProgressLogger | mutableprotected |
| LogType enum name | ProgressLogger | |
| NONE enum value | ProgressLogger | |
| PeptideVectorType typedef | TransitionTSVReader | private |
| ProgressLogger() | ProgressLogger | |
| ProteinVectorType typedef | TransitionTSVReader | private |
| readTSVInput_(const char *filename, std::vector< TSVTransition > &transition_list) | TransitionTSVReader | private |
| readUnstructuredTSVInput_(const char *filename, std::vector< TSVTransition > &transition_list) | TransitionTSVReader | private |
| recursion_depth_ | ProgressLogger | protectedstatic |
| setLogType(LogType type) const | ProgressLogger | |
| setProgress(SignedSize value) const | ProgressLogger | |
| startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger | |
| stop_watch_ | ProgressLogger | mutableprotected |
| strarray | TransitionTSVReader | privatestatic |
| TransitionVectorType typedef | TransitionTSVReader | private |
| TSVToTargetedExperiment_(std::vector< TSVTransition > &transition_list, OpenMS::TargetedExperiment &exp) | TransitionTSVReader | private |
| type_ | ProgressLogger | mutableprotected |
| validateTargetedExperiment(OpenMS::TargetedExperiment &targeted_exp) | TransitionTSVReader | |
| value_ | ProgressLogger | mutableprotected |
| writeTSVOutput_(const char *filename, OpenMS::TargetedExperiment &targeted_exp) | TransitionTSVReader | private |
| ~ProgressLogger() | ProgressLogger | |