A 1-dimensional raw data point or peak. More...
#include <OpenMS/KERNEL/Peak1D.h>
Classes | |
| struct | IntensityLess |
| struct | MZLess |
| Comparator by m/z position. More... | |
| struct | PositionLess |
| Comparator by position. As this class has dimension 1, this is basically an alias for MZLess. More... | |
Public Types | |
Type definitions | |
Dimension | |
| enum | { DIMENSION = 1 } |
| typedef Real | IntensityType |
| Intensity type. More... | |
| typedef DPosition< 1 > | PositionType |
| Position type. More... | |
| typedef DoubleReal | CoordinateType |
| Coordinate type. More... | |
Public Member Functions | |
| Peak1D & | operator= (const Peak1D &rhs) |
| Assignment operator. More... | |
| bool | operator== (const Peak1D &rhs) const |
| Equality operator. More... | |
| bool | operator!= (const Peak1D &rhs) const |
| Equality operator. More... | |
Constructors and Destructor | |
Default constructor | |
| Peak1D () | |
| Peak1D (const Peak1D &p) | |
| Copy constructor. More... | |
| ~Peak1D () | |
| Destructor. More... | |
Accessors | |
| IntensityType | getIntensity () const |
| void | setIntensity (IntensityType intensity) |
| Mutable access to the data point intensity (height) More... | |
| CoordinateType | getMZ () const |
| Non-mutable access to m/z. More... | |
| void | setMZ (CoordinateType mz) |
| Mutable access to m/z. More... | |
| CoordinateType | getPos () const |
| Alias for getMZ() More... | |
| void | setPos (CoordinateType pos) |
| Alias for setMZ() More... | |
| PositionType const & | getPosition () const |
| Non-mutable access to the position. More... | |
| PositionType & | getPosition () |
| Mutable access to the position. More... | |
| void | setPosition (PositionType const &position) |
| Mutable access to the position. More... | |
Protected Attributes | |
| PositionType | position_ |
| The data point position. More... | |
| IntensityType | intensity_ |
| The data point intensity. More... | |
A 1-dimensional raw data point or peak.
This datastructure is intended for continuous data or peak data. If wou want to annotated single peaks with meta data, use RichPeak1D instead.
| typedef DoubleReal CoordinateType |
Coordinate type.
| typedef Real IntensityType |
Intensity type.
| typedef DPosition<1> PositionType |
Position type.
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Non-mutable access to the data point intensity (height)
Referenced by Peak1D::IntensityLess::operator()(), MzMLHandler< MapType >::writePrecursor_(), MzDataHandler< MapType >::writeTo(), and MzXMLHandler< MapType >::writeTo().
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Non-mutable access to m/z.
Referenced by OfflinePrecursorIonSelection::makePrecursorSelectionForKnownLCMSMap(), Peak1D::MZLess::operator()(), DTAFile::store(), MzMLHandler< MapType >::writePrecursor_(), MzDataHandler< MapType >::writeTo(), and MzXMLHandler< MapType >::writeTo().
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Alias for getMZ()
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Non-mutable access to the position.
Referenced by Peak1D::PositionLess::operator()().
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Mutable access to the position.
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Equality operator.
Assignment operator.
References Peak1D::intensity_, and Peak1D::position_.
Referenced by RichPeak1D::operator=().
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Equality operator.
References Peak1D::intensity_, and Peak1D::position_.
Referenced by RichPeak1D::operator==().
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Mutable access to the data point intensity (height)
Referenced by OfflinePrecursorIonSelection::makePrecursorSelectionForKnownLCMSMap(), EmgScoring::prepareFit_(), CachedmzML::readSpectrum_(), and FeatureFinderAlgorithmMRM< PeakType, FeatureType >::run().
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Mutable access to m/z.
Referenced by IDEvaluationBase::getPoints(), DTAFile::load(), TOPPRNPxl::main_(), OfflinePrecursorIonSelection::makePrecursorSelectionForKnownLCMSMap(), EmgScoring::prepareFit_(), ChromatogramExtractor::prepareSpectra_(), CachedmzML::readSpectrum_(), FeatureFinderAlgorithmMRM< PeakType, FeatureType >::run(), and TOPPViewBase::showSpectrumGenerationDialog().
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Alias for setMZ()
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Mutable access to the position.
Referenced by MSSpectrum< RichPeak1D >::MZBegin(), and MSSpectrum< RichPeak1D >::MZEnd().
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The data point intensity.
Referenced by Peak1D::operator=(), and Peak1D::operator==().
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The data point position.
Referenced by Peak1D::operator=(), and Peak1D::operator==().
| OpenMS / TOPP release 1.11.1 | Documentation generated on Thu Nov 14 2013 11:19:32 using doxygen 1.8.5 |