Extract extended statistics on the features of a map for quality control.
| pot. predecessor tools | FileInfo | pot. successor tools |
| FeatureFinder, FeatureMatcher | - |
This tool computes some basic statistics on the features of a map that are frequently used for quality control. In contrast to FileInfo
Information displayed includes:
The command line parameters of this tool are:
FileInfo -- Shows basic information about the file, such as data ranges and file type.
Version: 1.11.1 Nov 14 2013, 11:18:15, Revision: 11976
Usage:
FileInfo <options>
Options (mandatory options marked with '*'):
-in <file>* Input file (valid formats: 'mzData', 'mzXML', 'mzML', 'dta', 'dta2d', 'mgf', 'featureXM
L', 'consensusXML', 'idXML', 'pepXML', 'fid')
-in_type <type> Input file type -- default: determined from file extension or content (valid: 'mzData',
'mzXML', 'mzML', 'dta', 'dta2d', 'mgf', 'featureXML', 'consensusXML', 'idXML', 'pepXML',
'fid')
-out <file> Optional output file. If left out, the output is written to the command line. (valid
formats: 'txt')
-m Show meta information about the whole experiment
-p Shows data processing information
-s Computes a five-number statistics of intensities, qualities, and widths
-d Show detailed listing of all spectra and chromatograms (peak files only)
-c Check for corrupt data in the file (peak files only)
-v Validate the file only (for mzML, mzData, mzXML, featureXML, idXML, consensusXML, pepXML
)
Common TOPP options:
-ini <file> Use the given TOPP INI file
-threads <n> Sets the number of threads allowed to be used by the TOPP tool (default: '1')
-write_ini <file> Writes the default configuration file
--help Shows options
--helphelp Shows all options (including advanced)
INI file documentation of this tool:
| OpenMS / TOPP release 1.11.1 | Documentation generated on Thu Nov 14 2013 11:19:24 using doxygen 1.8.5 |