| combineQualifiers(QualifierVector, QualifierVector, boolean) |   | 26% |   | 36% | 11 | 16 | 31 | 42 | 0 | 1 |
| handleSelenocysteine(QualifierVector, Feature) |  | 0% |  | 0% | 9 | 9 | 26 | 26 | 1 | 1 |
| joinUtrs(Feature, Key, QualifierVector) |   | 12% |   | 11% | 9 | 10 | 26 | 30 | 0 | 1 |
| mapGffToNativeFeature(Feature) |   | 82% |   | 66% | 20 | 34 | 19 | 89 | 0 | 1 |
| map(Key, QualifierVector) |   | 64% |   | 50% | 5 | 8 | 10 | 20 | 0 | 1 |
| mapKeys(Key) |  | 0% |  | 0% | 4 | 4 | 6 | 6 | 1 | 1 |
| handlePartials(QualifierVector, Location) |   | 27% |   | 50% | 2 | 3 | 8 | 11 | 0 | 1 |
| makeNativeFeature(Feature, boolean) |   | 56% |   | 50% | 5 | 8 | 5 | 11 | 0 | 1 |
| processProductValues(Qualifier) |   | 84% |   | 57% | 8 | 14 | 3 | 21 | 0 | 1 |
| initDatabaseMappings() |   | 92% |   | 75% | 6 | 13 | 4 | 63 | 0 | 1 |
| makeNativeSequence(Sequence) |   | 61% |   | 50% | 1 | 2 | 1 | 3 | 0 | 1 |
| PublicDBDocumentEntry(EntryInformation) |  | 0% | | n/a | 1 | 1 | 2 | 2 | 1 | 1 |
| getDatabaseQualifiersToRemove() | | 0% | | n/a | 1 | 1 | 2 | 2 | 1 | 1 |
| addNewQualifier(QualifierVector, Qualifier) |  | 97% |   | 87% | 1 | 5 | 1 | 12 | 0 | 1 |
| handleTranscripts(QualifierVector, Feature, int, ChadoCanonicalGene) |  | 100% |  | 100% | 0 | 4 | 0 | 13 | 0 | 1 |
| changeQualifierName(QualifierVector, String, String) |  | 100% |  | 100% | 0 | 4 | 0 | 12 | 0 | 1 |
| PublicDBDocumentEntry(EntryInformation, Document, ReadListener) |  | 100% | | n/a | 0 | 1 | 0 | 2 | 0 | 1 |
| PublicDBDocumentEntry(EntryInformation, Entry, boolean) |  | 100% | | n/a | 0 | 1 | 0 | 2 | 0 | 1 |
| static {...} | | 100% | | n/a | 0 | 1 | 0 | 1 | 0 | 1 |