Class ReSampleInt

java.lang.Object
org.snpeff.probablility.bootstrap.ReSampleInt
Direct Known Subclasses:
ReSampleMap, ReSampleMapRank
public class ReSampleInt extends Object
Re-sample statistic Statistic is a sum of a set of integer numbers (e.g. ranks). The statistic is sampled and PDF/CDF can be calculated from empirical random re-sampling.
Author:
pablocingolani

  • Constructor Details

    • ReSampleInt

      public ReSampleInt(int[] scores, int sampleSize)

  • Method Details

    • cdf

      public double cdf(int number)
      Cummulative distribution for this number
      Parameters:
      number -
      Returns:

    • clearStats

      protected void clearStats()
      Clear previous statistics

    • evaluate

      protected int evaluate()
      Random sample and evaluate

    • max

      public int max()

    • min

      public int min()

    • quantile

      public int quantile(double quantile)
      Smallest number whose CDF is larger than a given quantile. I.e. x such that P[ X invalid input: '<'= x ] >= Quantile
      Parameters:
      quantile -
      Returns:

    • resample

      public void resample(int iterations)
      Re-sample 'iterations' times
      Parameters:
      iterations -

    • setVerbose

      public void setVerbose(boolean verbose)

    • toString

      public String toString()
      Overrides:
      toString in class Object