Class SpliceSiteBranchU12
java.lang.Object
org.snpeff.interval.Interval
org.snpeff.interval.Marker
org.snpeff.interval.SpliceSite
org.snpeff.interval.SpliceSiteBranch
org.snpeff.interval.SpliceSiteBranchU12
- All Implemented Interfaces:
Serializable, Cloneable, Comparable<Interval>, TxtSerializable
A (putative) U12 branch site.
- Author:
- pablocingolani
- See Also:
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Field Summary
Fields inherited from class SpliceSite
CORE_SPLICE_SITE_SIZE, SPLICE_REGION_EXON_SIZE, SPLICE_REGION_INTRON_MAX, SPLICE_REGION_INTRON_MINFields inherited from class Interval
chromosomeNameOri, end, id, parent, start, strandMinus -
Constructor Summary
ConstructorsConstructorDescriptionSpliceSiteBranchU12(Intron parent, int start, int end, boolean strandMinus, String id) -
Method Summary
Methods inherited from class SpliceSiteBranch
intersectsCoreSpliceSiteMethods inherited from class SpliceSite
isShowWarningIfParentDoesNotInclude, variantEffectMethods inherited from class Marker
adjust, apply, applyDel, applyDup, applyIns, applyMixed, clone, cloneShallow, codonTable, compareTo, compareToPos, distance, distanceBases, getParent, getType, idChain, idChain, idChain, includes, intersect, isAdjustIfParentDoesNotInclude, isDeferredAnalysis, minus, query, query, readTxt, serializeParse, serializeSave, shouldApply, toString, union, variantEffectNonRefMethods inherited from class Interval
equals, findParent, getChromosome, getChromosomeName, getChromosomeNameOri, getChromosomeNum, getEnd, getGenome, getGenomeName, getId, getStart, getStrand, hashCode, intersects, intersects, intersects, intersects, intersectSize, isCircular, isSameChromo, isStrandMinus, isStrandPlus, isValid, setChromosomeNameOri, setEnd, setId, setParent, setStart, setStrandMinus, shiftCoordinates, size, toStr, toStringAsciiArt, toStrPos
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Constructor Details
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SpliceSiteBranchU12
public SpliceSiteBranchU12() -
SpliceSiteBranchU12
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